3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
ACGA*UCUAU
Length
9 nucleotides
Bulged bases
6BZ6|1|YA|C|2055, 6BZ6|1|YA|C|2612, 6BZ6|1|YA|U|2613
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BZ6_313 not in the Motif Atlas
Homologous match to IL_9DFE_079
Geometric discrepancy: 0.097
The information below is about IL_9DFE_079
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_70335.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

6BZ6|1|YA|A|2054
6BZ6|1|YA|C|2055
6BZ6|1|YA|G|2056
6BZ6|1|YA|A|2057
*
6BZ6|1|YA|U|2611
6BZ6|1|YA|C|2612
6BZ6|1|YA|U|2613
6BZ6|1|YA|A|2614
6BZ6|1|YA|U|2615

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y5
50S ribosomal protein L32
Chain YE
50S ribosomal protein L3
Chain YW
50S ribosomal protein L22

Coloring options:


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