3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
UG*CAAG
Length
6 nucleotides
Bulged bases
6BZ6|1|YA|A|2542
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BZ6_332 not in the Motif Atlas
Homologous match to IL_7RQB_099
Geometric discrepancy: 0.1019
The information below is about IL_7RQB_099
Detailed Annotation
Major groove platform with intercalation
Broad Annotation
Major groove platform
Motif group
IL_95601.3
Basepair signature
cWW-tSH-cWW
Number of instances in this motif group
10

Unit IDs

6BZ6|1|YA|U|2522
6BZ6|1|YA|G|2523
*
6BZ6|1|YA|C|2540
6BZ6|1|YA|A|2541
6BZ6|1|YA|A|2542
6BZ6|1|YA|G|2543

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y9
50S ribosomal protein L36
Chain YN
50S ribosomal protein L13

Coloring options:


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