IL_6BZ6_343

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6BZ6|1|YB|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BZ6_343 not in the Motif Atlas

Homologous match to IL_4V9F_101

Geometric discrepancy: 0.1436

The information below is about IL_4V9F_101

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6BZ6|1|YB|C|17
6BZ6|1|YB|G|18
*
6BZ6|1|YB|C|65
6BZ6|1|YB|A|66
6BZ6|1|YB|G|67

Current chains

Chain YB

5S rRNA

Nearby chains

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YS

50S ribosomal protein L18

Chain YZ

50S ribosomal protein L25