3D structure

PDB id
6BZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.
Experimental method
X-RAY DIFFRACTION
Resolution
3.68 Å

Loop

Sequence
CGAUGGUAC*GGAGAGUAG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BZ7_173 not in the Motif Atlas
Homologous match to IL_7RQB_115
Geometric discrepancy: 0.093
The information below is about IL_7RQB_115
Detailed Annotation
Bacterial 5S Loop E
Broad Annotation
Loop E
Motif group
IL_56455.3
Basepair signature
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6BZ7|1|RB|C|71
6BZ7|1|RB|G|72
6BZ7|1|RB|A|73
6BZ7|1|RB|U|74
6BZ7|1|RB|G|75
6BZ7|1|RB|G|76
6BZ7|1|RB|U|77
6BZ7|1|RB|A|78
6BZ7|1|RB|C|79
*
6BZ7|1|RB|G|97
6BZ7|1|RB|G|98
6BZ7|1|RB|A|99
6BZ7|1|RB|G|100
6BZ7|1|RB|A|101
6BZ7|1|RB|G|102
6BZ7|1|RB|U|103
6BZ7|1|RB|A|104
6BZ7|1|RB|G|105

Current chains

Chain RB
5S rRNA

Nearby chains

Chain RA
Large subunit ribosomal RNA; LSU rRNA
Chain RQ
50S ribosomal protein L16
Chain RZ
50S ribosomal protein L25

Coloring options:


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