IL_6C0F_013
3D structure
- PDB id
- 6C0F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast nucleolar pre-60S ribosomal subunit (state 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C0F_013 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0885
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6C0F|1|1|G|404
6C0F|1|1|U|405
6C0F|1|1|G|406
6C0F|1|1|A|407
6C0F|1|1|A|408
6C0F|1|1|A|409
6C0F|1|1|U|410
*
6C0F|1|2|A|13
6C0F|1|2|C|14
6C0F|1|2|G|15
6C0F|1|2|G|16
6C0F|1|2|A|17
6C0F|1|2|U|18
6C0F|1|2|C|19
Current chains
- Chain 1
- Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain D
- Protein MAK16
- Chain I
- Ribosome production factor 1
- Chain P
- 60S ribosomal protein L17-A
- Chain e
- 60S ribosomal protein L32
Coloring options: