IL_6C0F_025

3D structure

PDB id

6C0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C0F_025 not in the Motif Atlas

Homologous match to IL_5TBW_026

Geometric discrepancy: 0.2058

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6C0F|1|1|C|758
6C0F|1|1|U|759
6C0F|1|1|G|760
6C0F|1|1|A|761
6C0F|1|1|U|762
6C0F|1|1|G|763
*
6C0F|1|1|C|768
6C0F|1|1|G|769
6C0F|1|1|G|770
6C0F|1|1|A|771
6C0F|1|1|U|772
6C0F|1|1|G|773

Current chains

Chain 1

Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA

Nearby chains

Chain b

Ribosome biogenesis protein BRX1