IL_6C0F_039
3D structure
- PDB id
- 6C0F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast nucleolar pre-60S ribosomal subunit (state 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUUG*CGAA
- Length
- 9 nucleotides
- Bulged bases
- 6C0F|1|1|U|3058
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C0F_039 not in the Motif Atlas
- Geometric match to IL_361D_001
- Geometric discrepancy: 0.3657
- The information below is about IL_361D_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_30621.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 66
Unit IDs
6C0F|1|1|U|3055
6C0F|1|1|U|3056
6C0F|1|1|U|3057
6C0F|1|1|U|3058
6C0F|1|1|G|3059
*
6C0F|1|1|C|3084
6C0F|1|1|G|3085
6C0F|1|1|A|3086
6C0F|1|1|A|3087
Current chains
- Chain 1
- Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain u
- Ribosome biogenesis protein RLP24
- Chain v
- Ribosome biogenesis protein SSF1
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