IL_6C4H_007

3D structure

PDB id

6C4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAAAAUGGUGAUACCAGC*GGC

Length

22 nucleotides

Bulged bases

6C4H|1|A|U|1758, 6C4H|1|A|G|1763

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4H_007 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.3518

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6C4H|1|A|G|1674
6C4H|1|A|C|1675
6C4H|1|A|A|1676
6C4H|1|A|A|1677
6C4H|1|A|A|1678
6C4H|1|A|A|1679
6C4H|1|A|U|1680
6C4H|1|A|G|1681
6C4H|1|A|G|1682
6C4H|1|A|U|1683
6C4H|1|A|G|1684
6C4H|1|A|A|1757
6C4H|1|A|U|1758
6C4H|1|A|A|1759
6C4H|1|A|C|1760
6C4H|1|A|C|1761
6C4H|1|A|A|1762
6C4H|1|A|G|1763
6C4H|1|A|C|1764
*
6C4H|1|A|G|1988
6C4H|1|A|G|1989
6C4H|1|A|C|1990

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3