IL_6C4H_011

3D structure

PDB id

6C4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

6C4H|1|A|A|1899, 6C4H|1|A|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4H_011 not in the Motif Atlas

Homologous match to IL_5J7L_315

Geometric discrepancy: 0.1277

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6C4H|1|A|U|1841
6C4H|1|A|G|1842
*
6C4H|1|A|U|1898
6C4H|1|A|A|1899
6C4H|1|A|A|1900
6C4H|1|A|A|1901

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2