IL_6C4H_013
3D structure
- PDB id
- 6C4H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 6C4H|1|A|A|1938, 6C4H|1|A|U|1944
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C4H_013 not in the Motif Atlas
- Homologous match to IL_5J7L_319
- Geometric discrepancy: 0.0968
- The information below is about IL_5J7L_319
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
6C4H|1|A|C|1934
6C4H|1|A|G|1935
6C4H|1|A|A|1936
6C4H|1|A|A|1937
6C4H|1|A|A|1938
6C4H|1|A|5MU|1939
6C4H|1|A|U|1940
6C4H|1|A|C|1941
6C4H|1|A|C|1942
6C4H|1|A|U|1943
6C4H|1|A|U|1944
6C4H|1|A|G|1945
*
6C4H|1|A|C|1961
6C4H|1|A|5MC|1962
6C4H|1|A|U|1963
6C4H|1|A|G|1964
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain v
- Peptide chain release factor RF2
Coloring options: