IL_6C4I_019

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_019 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.0965

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6C4I|1|A|U|703
6C4I|1|A|G|704
6C4I|1|A|A|705
6C4I|1|A|A|706
6C4I|1|A|G|707
*
6C4I|1|A|U|724
6C4I|1|A|G|725
6C4I|1|A|G|726
6C4I|1|A|A|727
6C4I|1|A|G|728

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2