IL_6C4I_047
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C4I_047 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.0645
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6C4I|1|A|A|1262
6C4I|1|A|U|1263
6C4I|1|A|A|1264
6C4I|1|A|A|1265
6C4I|1|A|G|1266
6C4I|1|A|U|1267
6C4I|1|A|A|1268
6C4I|1|A|A|1269
*
6C4I|1|A|U|2011
6C4I|1|A|G|2012
6C4I|1|A|A|2013
6C4I|1|A|A|2014
6C4I|1|A|A|2015
6C4I|1|A|U|2016
6C4I|1|A|U|2017
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L22
Coloring options: