IL_6C4I_068

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6C4I|1|A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_068 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0653

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6C4I|1|A|C|1686
6C4I|1|A|G|1687
6C4I|1|A|U|1688
6C4I|1|A|A|1689
6C4I|1|A|A|1690
6C4I|1|A|C|1691
*
6C4I|1|A|G|1696
6C4I|1|A|G|1697
6C4I|1|A|A|1698
6C4I|1|A|G|1699
6C4I|1|A|A|1700
6C4I|1|A|A|1701
6C4I|1|A|G|1702

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA