IL_6C4I_069
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- UAUGUAG*UGAAA
- Length
- 12 nucleotides
- Bulged bases
- 6C4I|1|A|U|1714
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C4I_069 not in the Motif Atlas
- Homologous match to IL_5J7L_309
- Geometric discrepancy: 0.1094
- The information below is about IL_5J7L_309
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88269.4
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
6C4I|1|A|U|1712
6C4I|1|A|A|1713
6C4I|1|A|U|1714
6C4I|1|A|G|1715
6C4I|1|A|U|1716
6C4I|1|A|A|1717
6C4I|1|A|G|1718
*
6C4I|1|A|U|1742
6C4I|1|A|G|1743
6C4I|1|A|A|1744
6C4I|1|A|A|1745
6C4I|1|A|A|1746
Current chains
- Chain A
- 23S rRNA
Nearby chains
No other chains within 10ÅColoring options: