IL_6C4I_071

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

6C4I|1|A|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_071 not in the Motif Atlas

Homologous match to IL_7A0S_064

Geometric discrepancy: 0.0998

The information below is about IL_7A0S_064

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

6C4I|1|A|G|1770
6C4I|1|A|C|1771
*
6C4I|1|A|G|1980
6C4I|1|A|A|1981
6C4I|1|A|U|1982

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2