IL_6C4I_088

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

UGGGAG*CGACCUUGAAAUACCA

Length

22 nucleotides

Bulged bases

6C4I|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C4I|1|A|U|2122
6C4I|1|A|G|2123
6C4I|1|A|G|2124
6C4I|1|A|G|2125
6C4I|1|A|A|2126
6C4I|1|A|G|2127
*
6C4I|1|A|C|2161
6C4I|1|A|G|2162
6C4I|1|A|A|2163
6C4I|1|A|C|2164
6C4I|1|A|C|2165
6C4I|1|A|U|2166
6C4I|1|A|U|2167
6C4I|1|A|G|2168
6C4I|1|A|A|2169
6C4I|1|A|A|2170
6C4I|1|A|A|2171
6C4I|1|A|U|2172
6C4I|1|A|A|2173
6C4I|1|A|C|2174
6C4I|1|A|C|2175
6C4I|1|A|A|2176

Current chains

Chain A

23S rRNA

Nearby chains

Chain y

Transfer RNA; tRNA