IL_6C4I_096
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C4I_096 not in the Motif Atlas
- Homologous match to IL_5J7L_338
- Geometric discrepancy: 0.0959
- The information below is about IL_5J7L_338
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6C4I|1|A|C|2466
6C4I|1|A|C|2467
6C4I|1|A|A|2468
6C4I|1|A|A|2469
6C4I|1|A|G|2470
*
6C4I|1|A|C|2480
6C4I|1|A|G|2481
6C4I|1|A|A|2482
6C4I|1|A|C|2483
6C4I|1|A|G|2484
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L36
- Chain N
- 50S ribosomal protein L16
- Chain v
- Peptide chain release factor 2
Coloring options: