IL_6C4I_112

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_112 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.0721

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6C4I|1|A|U|2847
6C4I|1|A|G|2848
6C4I|1|A|U|2849
6C4I|1|A|A|2850
6C4I|1|A|A|2851
6C4I|1|A|G|2852
*
6C4I|1|A|U|2865
6C4I|1|A|U|2866
6C4I|1|A|G|2867
6C4I|1|A|A|2868
6C4I|1|A|G|2869

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain Q

50S ribosomal protein L19