IL_6C4I_120

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CCUAAC*GGG

Length

9 nucleotides

Bulged bases

6C4I|1|a|C|48, 6C4I|1|a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_120 not in the Motif Atlas

Homologous match to IL_5J7L_003

Geometric discrepancy: 0.0809

The information below is about IL_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6C4I|1|a|C|47
6C4I|1|a|C|48
6C4I|1|a|U|49
6C4I|1|a|A|50
6C4I|1|a|A|51
6C4I|1|a|C|52
*
6C4I|1|a|G|359
6C4I|1|a|G|360
6C4I|1|a|G|361

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S12