IL_6C4I_130

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GGACC*GGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_130 not in the Motif Atlas

Homologous match to IL_5J7L_013

Geometric discrepancy: 0.445

The information below is about IL_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66997.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6C4I|1|a|G|203
6C4I|1|a|G|204
6C4I|1|a|A|205
6C4I|1|a|C|206
6C4I|1|a|C|207
*
6C4I|1|a|G|212
6C4I|1|a|G|213
6C4I|1|a|C|214

Current chains

Chain a

16S rRNA

Nearby chains