IL_6C4I_133

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_133 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.1159

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6C4I|1|a|G|292
6C4I|1|a|G|293
*
6C4I|1|a|U|304
6C4I|1|a|G|305
6C4I|1|a|A|306
6C4I|1|a|C|307
6C4I|1|a|C|308

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16