IL_6C4I_137

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_137 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1022

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6C4I|1|a|U|409
6C4I|1|a|G|410
6C4I|1|a|A|411
6C4I|1|a|A|412
6C4I|1|a|G|413
6C4I|1|a|A|414
6C4I|1|a|A|415
6C4I|1|a|G|416
*
6C4I|1|a|U|427
6C4I|1|a|G|428
6C4I|1|a|U|429
6C4I|1|a|A|430
6C4I|1|a|A|431
6C4I|1|a|A|432
6C4I|1|a|G|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4