IL_6C4I_162

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GGAAG*UGUGCCUUCGGGAACC

Length

21 nucleotides

Bulged bases

6C4I|1|a|U|1025, 6C4I|1|a|U|1030, 6C4I|1|a|G|1032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C4I|1|a|G|1002
6C4I|1|a|G|1003
6C4I|1|a|A|1004
6C4I|1|a|A|1005
6C4I|1|a|G|1006
*
6C4I|1|a|U|1023
6C4I|1|a|G|1024
6C4I|1|a|U|1025
6C4I|1|a|G|1026
6C4I|1|a|C|1027
6C4I|1|a|C|1028
6C4I|1|a|U|1029
6C4I|1|a|U|1030
6C4I|1|a|C|1031
6C4I|1|a|G|1032
6C4I|1|a|G|1033
6C4I|1|a|G|1034
6C4I|1|a|A|1035
6C4I|1|a|A|1036
6C4I|1|a|C|1037
6C4I|1|a|C|1038

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S14