3D structure

PDB id
6C4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Conformation of methylated GGQ in the peptidyl transferase center during translation termination
Experimental method
ELECTRON MICROSCOPY
Resolution
3.24 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6C4I_168 not in the Motif Atlas
Geometric match to IL_4LFB_047
Geometric discrepancy: 0.083
The information below is about IL_4LFB_047
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_68118.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
28

Unit IDs

6C4I|1|a|G|1061
6C4I|1|a|U|1062
6C4I|1|a|C|1063
*
6C4I|1|a|G|1193
6C4I|1|a|U|1194
6C4I|1|a|C|1195

Current chains

Chain a
16S rRNA

Nearby chains

Chain c
30S ribosomal protein S3
Chain e
30S ribosomal protein S5
Chain j
30S ribosomal protein S10
Chain n
30S ribosomal protein S14
Chain v
Peptide chain release factor 2
Chain w
Alternative ribosome-rescue factor A

Coloring options:


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