IL_6C4I_171

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases (A, C, G, U)

1159U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_171 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.1122

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6C4I|1|a|C|1158
6C4I|1|a|U|1159
6C4I|1|a|G|1160
6C4I|1|a|C|1161
*
6C4I|1|a|G|1175
6C4I|1|a|A|1176
6C4I|1|a|G|1177
6C4I|1|a|G|1178
6C4I|1|a|A|1179
6C4I|1|a|A|1180
6C4I|1|a|G|1181

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain i

30S ribosomal protein S9