IL_6C4I_175

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_175 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.077

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6C4I|1|a|C|1303
6C4I|1|a|G|1304
6C4I|1|a|G|1305
6C4I|1|a|A|1306
6C4I|1|a|U|1307
6C4I|1|a|U|1308
*
6C4I|1|a|A|1329
6C4I|1|a|U|1330
6C4I|1|a|G|1331
6C4I|1|a|A|1332
6C4I|1|a|A|1333
6C4I|1|a|G|1334

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S13