IL_6C4I_185

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6C4I|1|A|U|846, 6C4I|1|A|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_185 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.1177

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6C4I|1|A|A|844
6C4I|1|A|A|845
6C4I|1|A|U|846
6C4I|1|A|U|847
6C4I|1|A|C|848
*
6C4I|1|A|G|930
6C4I|1|A|U|931
6C4I|1|A|U|932
6C4I|1|A|A|933
6C4I|1|A|U|934

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L30