IL_6C5L_002

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GU*GAC

Length

5 nucleotides

Bulged bases

6C5L|1|AA|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_002 not in the Motif Atlas

Homologous match to IL_4LFB_002

Geometric discrepancy: 0.1465

The information below is about IL_4LFB_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6C5L|1|AA|G|44
6C5L|1|AA|U|45
*
6C5L|1|AA|G|396
6C5L|1|AA|A|397
6C5L|1|AA|C|398

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain DI

50S ribosomal protein L9