IL_6C5L_040

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AGGGAAC*GGUGCCCCGCGAGGGGAGCCCU

Length

29 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|AA|A|1001
6C5L|1|AA|G|1001|||A
6C5L|1|AA|G|1002
6C5L|1|AA|G|1003
6C5L|1|AA|A|1004
6C5L|1|AA|A|1005
6C5L|1|AA|C|1006
*
6C5L|1|AA|G|1023
6C5L|1|AA|G|1024
6C5L|1|AA|U|1025
6C5L|1|AA|G|1026
6C5L|1|AA|C|1027
6C5L|1|AA|C|1028
6C5L|1|AA|C|1029
6C5L|1|AA|C|1030
6C5L|1|AA|G|1030|||A
6C5L|1|AA|C|1030|||B
6C5L|1|AA|G|1030|||C
6C5L|1|AA|A|1030|||D
6C5L|1|AA|G|1031
6C5L|1|AA|G|1032
6C5L|1|AA|G|1033
6C5L|1|AA|G|1034
6C5L|1|AA|A|1035
6C5L|1|AA|G|1036
6C5L|1|AA|C|1037
6C5L|1|AA|C|1038
6C5L|1|AA|C|1039
6C5L|1|AA|U|1040

Current chains

Chain AA

16S rRNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA