IL_6C5L_042

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGCAUG*CAUGG

Length

12 nucleotides

Bulged bases

6C5L|1|AA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|AA|C|1051
6C5L|1|AA|U|1052
6C5L|1|AA|G|1053
6C5L|1|AA|C|1054
6C5L|1|AA|A|1055
6C5L|1|AA|U|1056
6C5L|1|AA|G|1057
*
6C5L|1|AA|C|1203
6C5L|1|AA|A|1204
6C5L|1|AA|U|1205
6C5L|1|AA|G|1206
6C5L|1|AA|G|1207

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14 type Z

Chain AX

mRNA

Chain AY

Peptide chain release factor 2