IL_6C5L_050

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCCAC*GGAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_050 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.4569

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6C5L|1|AA|G|1258
6C5L|1|AA|C|1259
6C5L|1|AA|C|1260
6C5L|1|AA|A|1261
6C5L|1|AA|C|1262
*
6C5L|1|AA|G|1273
6C5L|1|AA|G|1274
6C5L|1|AA|A|1275
6C5L|1|AA|G|1276
6C5L|1|AA|C|1277

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AN

30S ribosomal protein S14 type Z

Chain AU

30S ribosomal protein Thx