IL_6C5L_060

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

6C5L|1|AA|G|1442|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_060 not in the Motif Atlas

Homologous match to IL_6CZR_172

Geometric discrepancy: 0.4678

The information below is about IL_6CZR_172

Detailed Annotation

Isolated basepair with bulged bases

Broad Annotation

Isolated basepair with bulged bases

Motif group

IL_97255.3

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6C5L|1|AA|C|1440
6C5L|1|AA|G|1441
6C5L|1|AA|G|1442
6C5L|1|AA|G|1442|||A
6C5L|1|AA|A|1442|||B
6C5L|1|AA|G|1443
*
6C5L|1|AA|C|1459
6C5L|1|AA|A|1460
6C5L|1|AA|G|1461

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BT

50S ribosomal protein L19