IL_6C5L_066
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C5L_066 not in the Motif Atlas
- Homologous match to IL_7RQB_006
- Geometric discrepancy: 0.088
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6C5L|1|BA|G|188
6C5L|1|BA|G|189
6C5L|1|BA|A|190
6C5L|1|BA|A|191
6C5L|1|BA|C|192
6C5L|1|BA|U|193
6C5L|1|BA|G|194
*
6C5L|1|BA|C|201
6C5L|1|BA|U|202
6C5L|1|BA|C|203
6C5L|1|BA|A|204
6C5L|1|BA|G|205
6C5L|1|BA|U|206
6C5L|1|BA|A|207
6C5L|1|BA|C|208
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B1
- 50S ribosomal protein L28
- Chain B7
- 50S ribosomal protein L34
- Chain B8
- 50S ribosomal protein L35
- Chain BP
- 50S ribosomal protein L15
Coloring options: