IL_6C5L_067

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_067 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0851

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6C5L|1|BA|U|239
6C5L|1|BA|G|240
6C5L|1|BA|A|241
6C5L|1|BA|G|242
6C5L|1|BA|U|243
6C5L|1|BA|A|244
6C5L|1|BA|G|245
*
6C5L|1|BA|C|253
6C5L|1|BA|G|254
6C5L|1|BA|A|255
6C5L|1|BA|A|256
6C5L|1|BA|A|257
6C5L|1|BA|G|258

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B8

50S ribosomal protein L35

Chain BP

50S ribosomal protein L15