IL_6C5L_083
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGA*UAACC
- Length
- 8 nucleotides
- Bulged bases
- 6C5L|1|BA|G|776, 6C5L|1|BA|A|788, 6C5L|1|BA|A|789, 6C5L|1|BA|C|790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C5L_083 not in the Motif Atlas
- Geometric match to IL_7RQB_023
- Geometric discrepancy: 0.1056
- The information below is about IL_7RQB_023
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.6
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6C5L|1|BA|G|775
6C5L|1|BA|G|776
6C5L|1|BA|A|777
*
6C5L|1|BA|U|787
6C5L|1|BA|A|788
6C5L|1|BA|A|789
6C5L|1|BA|C|790
6C5L|1|BA|C|791
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B7
- 50S ribosomal protein L34
- Chain BD
- 50S ribosomal protein L2
- Chain BF
- 50S ribosomal protein L4
- Chain BW
- 50S ribosomal protein L22
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