IL_6C5L_099

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

6C5L|1|BA|U|1142

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_099 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1246

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6C5L|1|BA|C|1018
6C5L|1|BA|U|1019
6C5L|1|BA|A|1020
6C5L|1|BA|A|1021
6C5L|1|BA|G|1022
6C5L|1|BA|U|1023
6C5L|1|BA|G|1024
*
6C5L|1|BA|C|1140
6C5L|1|BA|U|1141
6C5L|1|BA|U|1142
6C5L|1|BA|A|1142|||A
6C5L|1|BA|A|1143
6C5L|1|BA|G|1144

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BN

50S ribosomal protein L13