IL_6C5L_106

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

6C5L|1|BA|A|1220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_106 not in the Motif Atlas

Homologous match to IL_7RQB_048

Geometric discrepancy: 0.1006

The information below is about IL_7RQB_048

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6C5L|1|BA|G|1219
6C5L|1|BA|A|1220
6C5L|1|BA|C|1221
*
6C5L|1|BA|G|1229
6C5L|1|BA|C|1230

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BU

50S ribosomal protein L20

Chain BV

50S ribosomal protein L21