IL_6C5L_107

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_107 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0787

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6C5L|1|BA|A|1262
6C5L|1|BA|U|1263
6C5L|1|BA|G|1264
6C5L|1|BA|A|1265
6C5L|1|BA|G|1266
6C5L|1|BA|U|1267
6C5L|1|BA|A|1268
6C5L|1|BA|A|1269
*
6C5L|1|BA|U|2011
6C5L|1|BA|G|2012
6C5L|1|BA|A|2013
6C5L|1|BA|A|2014
6C5L|1|BA|A|2015
6C5L|1|BA|U|2016
6C5L|1|BA|U|2017

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BF

50S ribosomal protein L4

Chain BW

50S ribosomal protein L22