IL_6C5L_117

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_117 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.1557

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6C5L|1|BA|A|1469
6C5L|1|BA|G|1470
6C5L|1|BA|A|1471
6C5L|1|BA|A|1472
6C5L|1|BA|G|1473
*
6C5L|1|BA|U|1518
6C5L|1|BA|G|1519
6C5L|1|BA|G|1520
6C5L|1|BA|U|1523

Current chains

Chain BA

23S rRNA

Nearby chains