3D structure

PDB id
6C5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UAG*CG
Length
5 nucleotides
Bulged bases
6C5L|1|BA|A|1490
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6C5L_119 not in the Motif Atlas
Homologous match to IL_7RQB_062
Geometric discrepancy: 0.2563
The information below is about IL_7RQB_062
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_37497.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
118

Unit IDs

6C5L|1|BA|U|1489
6C5L|1|BA|A|1490
6C5L|1|BA|G|1491
*
6C5L|1|BA|C|1499
6C5L|1|BA|G|1500

Current chains

Chain BA
23S rRNA

Nearby chains

Chain BD
50S ribosomal protein L2

Coloring options:


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