IL_6C5L_125

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6C5L|1|BA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_125 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1495

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6C5L|1|BA|C|1686
6C5L|1|BA|G|1687
6C5L|1|BA|U|1688
6C5L|1|BA|A|1689
6C5L|1|BA|A|1690
6C5L|1|BA|C|1691
*
6C5L|1|BA|G|1696
6C5L|1|BA|G|1697
6C5L|1|BA|A|1698
6C5L|1|BA|G|1699
6C5L|1|BA|A|1700
6C5L|1|BA|A|1701
6C5L|1|BA|G|1702

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2