IL_6C5L_148

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_148 not in the Motif Atlas

Geometric match to IL_7RQB_092

Geometric discrepancy: 0.0972

The information below is about IL_7RQB_092

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

6C5L|1|BA|G|2454
6C5L|1|BA|G|2455
*
6C5L|1|BA|C|2496
6C5L|1|BA|A|2497
6C5L|1|BA|C|2498

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AY

Peptide chain release factor 2

Chain B0

50S ribosomal protein L27

Chain BE

50S ribosomal protein L3

Chain BQ

50S ribosomal protein L16