IL_6C5L_153

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6C5L|1|BA|G|2576, 6C5L|1|BA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_153 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.0938

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

6C5L|1|BA|C|2510
6C5L|1|BA|U|2511
6C5L|1|BA|C|2512
*
6C5L|1|BA|G|2574
6C5L|1|BA|C|2575
6C5L|1|BA|G|2576
6C5L|1|BA|A|2577
6C5L|1|BA|G|2578

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AY

Peptide chain release factor 2

Chain B5

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3