IL_6C5L_158

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

6C5L|1|BA|G|2655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_158 not in the Motif Atlas

Geometric match to IL_4WF9_100

Geometric discrepancy: 0.231

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6C5L|1|BA|C|2652
6C5L|1|BA|U|2653
6C5L|1|BA|A|2654
6C5L|1|BA|G|2655
6C5L|1|BA|U|2656
6C5L|1|BA|A|2657
6C5L|1|BA|C|2658
*
6C5L|1|BA|G|2663
6C5L|1|BA|G|2664
6C5L|1|BA|A|2665
6C5L|1|BA|C|2666
6C5L|1|BA|C|2667
6C5L|1|BA|G|2668

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BH

50S ribosomal protein L6