IL_6C5L_164

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGG*CCGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_164 not in the Motif Atlas

Homologous match to IL_7RQB_109

Geometric discrepancy: 0.1296

The information below is about IL_7RQB_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58764.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

6C5L|1|BA|G|2843
6C5L|1|BA|G|2844
6C5L|1|BA|G|2845
6C5L|1|BA|G|2846
*
6C5L|1|BA|C|2870
6C5L|1|BA|C|2871
6C5L|1|BA|G|2872
6C5L|1|BA|A|2873
6C5L|1|BA|C|2874

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BR

50S ribosomal protein L17

Chain BT

50S ribosomal protein L19