IL_6C5L_185

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_185 not in the Motif Atlas

Homologous match to IL_4LFB_015

Geometric discrepancy: 0.1373

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6C5L|1|CA|G|371
6C5L|1|CA|C|372
6C5L|1|CA|A|373
6C5L|1|CA|A|374
6C5L|1|CA|U|375
*
6C5L|1|CA|A|389
6C5L|1|CA|C|390

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16