IL_6C5L_187

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_187 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1664

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6C5L|1|CA|G|409
6C5L|1|CA|G|410
6C5L|1|CA|A|411
6C5L|1|CA|A|412
6C5L|1|CA|G|413
6C5L|1|CA|A|414
6C5L|1|CA|A|415
6C5L|1|CA|G|416
*
6C5L|1|CA|U|427
6C5L|1|CA|G|428
6C5L|1|CA|U|429
6C5L|1|CA|A|430
6C5L|1|CA|A|431
6C5L|1|CA|A|432
6C5L|1|CA|C|433

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CD

30S ribosomal protein S4