IL_6C5L_201

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

6C5L|1|CA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_201 not in the Motif Atlas

Homologous match to IL_6CZR_143

Geometric discrepancy: 0.1236

The information below is about IL_6CZR_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37722.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

2

Unit IDs

6C5L|1|CA|G|683
6C5L|1|CA|A|684
6C5L|1|CA|G|685
6C5L|1|CA|U|686
6C5L|1|CA|A|687
6C5L|1|CA|G|688
*
6C5L|1|CA|C|699
6C5L|1|CA|G|700
6C5L|1|CA|C|701
6C5L|1|CA|A|702
6C5L|1|CA|G|703
6C5L|1|CA|A|704
6C5L|1|CA|U|705
6C5L|1|CA|A|706
6C5L|1|CA|C|707

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CK

30S ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA