IL_6C5L_206

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

6C5L|1|CA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_206 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.1054

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6C5L|1|CA|G|925
6C5L|1|CA|G|926
6C5L|1|CA|G|927
*
6C5L|1|CA|U|1390
6C5L|1|CA|U|1391

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CX

mRNA