IL_6C5L_223

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_223 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1405

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6C5L|1|CA|G|1405
6C5L|1|CA|U|1406
6C5L|1|CA|C|1407
*
6C5L|1|CA|G|1494
6C5L|1|CA|U|1495
6C5L|1|CA|C|1496

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CM

30S ribosomal protein S13

Chain CV

Transfer RNA; tRNA

Chain CX

mRNA

Chain CY

Peptide chain release factor 2

Chain DA

Large subunit ribosomal RNA; LSU rRNA